Amino structure
I am feeling fundamentally lazy when writing this. In case you forgot, all amino acids have this formula:
Such that R is the functional group that decides basically the fundamental properties of each molecule
There is a lot of groups and other bullshit you can study about these but its probably easier to learn the fundamental structures of each amino acid because you can just re-derive the properties from first principles at that point
Simple / Hydrocarbons
The most fundamental amino acid is #Glycine, which has an R group of hydrogen, giving it a structure of:
The next most simple are ones that just have hydrocarbon chains, giving them hydrophobic properties, w/ variable shapes and masses
#Alanine: Methyl group addition
#Valine: Isopropyl addition
This is quickly becoming difficult to visualize but that's what the anki cards are for
Just found a cool plugin to let me render this easily, if it looks like gibberish and/or basic SMILES code to you you need to install obsidian-chem
#Leucine: iso-butyl addition
#Isoleucine:Think an isomer of leucine, 2-butyl addition
Weird cousins of the hydrocarbons
It gets a little weirder from here but not at all unintuitive
#Methionine: Thioether group addition idk
Think meth-thio-nine. I.e. there's a sulfur and a methyl on the R terminal end
#Proline: This one can only be described as absolutely bizarre.
The hydrocarbon bonds back to the amino nitrogen which causes steric strain, which makes this a common structural amino acid in areas of the protein where it bends. Yes I promise this is still an amino acid.
Aromatic😤
#Phenylalanine:Like phenol + alanine dehydration synthesis. Its a benzene ring on an amino acid. Don't let the name confuse you, it does not have an OH group.
#Tyrosine: Phenylalanine's polar cousin. There is an OH in the para position of the benzene, which adds a little bit of shared electronegativity to the ring. Apparently this makes it very useful in cell signaling, and it's a vital part of the tyrosine kinase receptor signaling mechanism
#Tryptophan: Biggest and most complex amino acid. Has a role in protein-protein interactions I guess
Polar friends :3
Next two are dead simple, just add an OH group
#Serine
#Cysteine: Adds a thiol (SH), helps form disulfide bonds IYKYK
These next ones require some explanation. At physiologic pH, the amino groups on the R group of these molecules are uncharged. Their variants, which will be discussed next, are acidic and become negatively charged
#Asparagine:
Charged aminos
Negatively charged/Acids:
These are the two acidic variants of the previous ones. The amine + ketone are replaced with a carboxylic acid
#Aspartic-acid:
Negatively Charged/Alkaline:
#Lysine: Primary amino takes accepts electrons/binds to negative charges
#Arginine:Contains a guanidinium group, which is highly basic
Side note, the guanidine structure (NH2)2C=(NH2+), at the end is the same guanidine in, #Guanine, the nucleotide.
#Histidine: Has a structure containing an imidazole ring, similar to histamine. Plays a role in enzyme active sites.